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PENELUSURAN SPESIMEN HERBARIUM DALAM JARINGAN
Abstract
In this technological era, some institutions in the world have scanned herbarium specimens into images and stored them in special portals. This makes it easier for researchers to access various collections spread all over the world. This study aimed to provide information about the online database portals that provide scanned images of herbarium specimens. The study was conducted by compiling the online database portals that provide scanned images of herbarium specimens in a matrix and then was scored to give recommendations for selecting a priority portal. The data were analyzed and described descriptively. This study showed that there are 13 online database portals that provide scanned images of herbarium specimens, namely portals of Australasian Virtual Herbarium (AVH), BioPortal: Browse Dutch Natural History Collections (BioPortal), e-ReColNat, Global Biodiversity Information Facility (GBIF), Kew Herbarium Catalogue (HerbWeb), Integrated Digitized Biocollections (iDigBio), JACQ Virtual Herbaria (JACQ), JSTOR’s Global Plants (JSTOR), MNHN Vascular Plants (P), NYBG C. V. Starr Virtual Herbarium, Plants of the World Online (POWO), Reflora Virtual Herbarium (Reflora), and Tropicos. The thirteen portals have characteristics (features) that are different from one another, not all of them provide fully open (free) access, scanned images of herbarium specimens downloaded are varied, and the availability of a feature for real-time observation of scanned herbarium specimens.
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Ardiyani, M., Dwibadra, D., Dewi, K., Mulyadi, Meliah, S., Maryanto, I., Rustiami, H., Arifiani, D., Rahajoe, J. S., Sutrisno, H., & Kanti, A. (2017). Temuan dan pertelaan jenis baru biota Indonesia 1967-2017: sumbangsih LIPI untuk sains. LIPI Press.
Australasian Virtual Herbarium. (2021a). About AVH. https://avh.chah.org.au/about
Australasian Virtual Herbarium. (2021b). Occurrence records. https://avh.ala.org.au/occurrences/search?q=#tab_recordImages
Baderan, D., Baderan, D. W. K., & Kumaji, S. S. (2022). Keanekaragaman tumbuhan suku Piperaceae di Kawasan Air Terjun Lombongo Provinsi Gorontalo. Bioma: Jurnal Biologi Makassar, 7(1), 95–102. https://doi.org/10.20956/bioma.v7i1.19494
Belyaeva, I., & Kovtonyuk, N. (2021). The role of digital herbarium collections in the taxonomic revision of complex plant families: Salicaceae sensu stricto. BIO Web of Conferences, 38(00014), 1–7. https://doi.org/10.1051/bioconf/20213800014
Bioportal. (2021a). BioPortal: browse Dutch Natural History collections. https://bioportal.naturalis.nl
Bioportal. (2021b). Search results for “Indonesia.” https://bioportal.naturalis.nl/result/specimen/localityText=Indonesia&logicalOperator=OR&from=0&size=100
Bioportal. (2021c). Specimen L.3093575, Phalaris minor Retz. https://bioportal.naturalis.nl/specimen/L.3093575/unitID=L.3093575&logicalOperator=AND&from=0
Borges, L. M., Reis, V. C., & Izbicki, R. (2020). Schrödinger’s phenotypes: Herbarium specimens show two‐dimensional images are both good and (not so) bad sources of morphological data. Methods in Ecology and Evolution, 11(10), 1296–1308. https://doi.org/10.1111/2041-210X.13450
Carranza-Rojas, J., Goeau, H., Bonnet, P., Mata-Montero, E., & Joly, A. (2017). Going deeper in the automated identification of herbarium specimens. BMC Evolutionary Biology, 17(181), 1–14. https://doi.org/10.1186/s12862-017-1014-z
Damayanto, I. P. G. P. (2016). Lulu ura bambu liar merambat endemik Nusa Tenggara Timur. Buletin Kakatua, 1, 14–16.
Damayanto, I. P. G. P. (2017). Climbing bamboos of Lesser Sunda Islands, Indonesia. In D. Widyatmoko, I. M. Sudiana, R. Lestari, S. R. Ariati, P. Lisdiyanti, S. S. Munawar, & S. Nugroho (Eds.), Proceedings The 1st SATREPS Conference (pp. 90–93). Center for Plant Conservation Botanic Gardens, Indonesian Institute of Sciences (LIPI).
Damayanto, I. P. G. P. (2018). Dinochloa malayana S.Dransf. (Poaceae: Bambusoideae), a new record for Indonesia. Reinwardtia, 17(1), 35–37. https://doi.org/10.14203/reinwardtia.v17i1.3351
Damayanto, I. P. G. P., Dalimunthe, S. H., & Megawati. (2021). Dinochloa scandens (Poaceae-Bambusoideae): distribution, habitat preference, and notes on synonymy. Jurnal Biodjati, 6(2), 174–189. https://doi.org/10.15575/biodjati.v6i2.12485
Damayanto, I. P. G. P., Fastanti, F. S., & Dalimunthe, S. H. (2020). Pemanfaatan portal basis data daring dalam validasi nama ilmiah jenis dan suku tumbuhan. Berkala Ilmu Perpustakaan Dan Informasi, 16(2), 170–183. https://doi.org/10.22146/bip.v16i2.770
Damayanto, I. P. G. P., Mahendra, T., & Rosalina, D. (2018). Bamboo diversity at Laiwangi-Wanggameti National Park, Sumba, Indonesia. Buletin Kebun Raya, 21(1), 45–52.
Damayanto, I. P. G. P., & Muhaimin, M. (2017). Notes on Chimonobambusa quadrangularis (Franceschi) Makino (Poaceae: Bambusoideae) as an invasive alien plant species in Indonesia. Floribunda, 5(7), 253–257.
Damayanto, I. P. G. P., & Rahmawati, K. (2018). Karakteristik koleksi spesimen tipe bambu di Herbarium Bogoriense, Pusat Penelitian Biologi–LIPI. BACA: Jurnal Dokumentasi Dan Informasi, 9(2), 113–134. https://doi.org/10.14203/j.baca.v39i2.424
Dillen, M., Groom, Q., Chagnoux, S., Güntsch, A., Hardisty, A., Haston, E., Livermore, L., Runnel, V., Schulman, L., Willemse, L., Wu, Z., & Phillips, S. (2019). A benchmark dataset of herbarium specimen images with label data. Biodiversity Data Journal, 7(e31817), 1–15. https://doi.org/10.3897/BDJ.7.e31817
Driani, M. (2009). Penelusuran informasi siswa melalui internet: studi kasus di perpustakaan MAN Insan Cendekia Serpong [Skripsi]. Universitas Islam Negeri Syarif Hidayatullah.
Efendi, M., Cahyanto, T., & Ramdan, D. M. (2022). Keanekaragaman tumbuhan berbiji di Blok Malagembol Cagar Alam Gunung Tilu Jawa Barat. Jurnal Penelitian Hutan Dan Konservasi Alam, 19(1), 1–31. https://doi.org/10.20886/jphka.2022.19.1.1-31
Egri, G., & Bayrak, C. (2014). The role of search engine optimization on keeping the user on the site. Procedia Computer Science, 36, 335–342. https://doi.org/10.1016/j.procs.2014.09.102
E-Recolnat. (2021a). Explore, statistiques. https://explore.recolnat.org/statistiques
E-Recolnat. (2021b). Recolnat infrastructure. https://www.recolnat.org/en
Franz, N. M., & Sterner, B. W. (2017). To increase trust, change the social design behind aggregated biodiversity data. Database: The Journal of Biological Databases and Curation, 2017, 1–12. https://doi.org/10.1093/database/bax100
Girmansyah, D., Santika, Y., Rugayah, & Rahajoe, J. S. (2018). Index herbariorum indonesianum. LIPI Press.
Global Biodiversity Information Facility. (2021a). Dinochloa scandens (Blume ex Nees) Kuntze. https://www.gbif.org/occurrence/912066622
Global Biodiversity Information Facility. (2021b). What is GBIF? https://www.gbif.org/what-is-gbif
Handayani, A. (2014, February 10). Cara penelusuran informasi melalui internet. https://anitanet.staff.ipb.ac.id/cara-penelusuran-informasi-melalui-internet/
Harris, K. M., & Marsico, T. D. (2017). Digitizing specimens in a small herbarium: A viable workflow for collections working with limited resources. Applications in Plant Sciences, 5(4), 1–9. https://doi.org/10.3732/apps.1600125
Heberling, J. M., & Isaac, B. L. (2017). Herbarium specimens as exaptations: New uses for old collections. American Journal of Botany, 104(7), 963–965. https://doi.org/10.3732/ajb.1700125
Heerlien, M., van Leusen, J., Schnörr, S., de Jong-Kole, S., Raes, N., & van Hulsen, K. (2015). The natural history production line: An industrial approach to the digitization of scientific collections. Journal on Computing and Cultural Heritage, 8(1), 1–11. https://doi.org/10.1145/2644822
Herbweb. (2021a). Dinochloa malayana S.Dransf. http://www.kew.org/herbcatimg/3293.jpg
Herbweb. (2021b). The herbarium. http://apps.kew.org/herbcat/gotoKewHerbarium.do
Herbweb. (2021c). Welcome to the Kew Herbarium catalogue. http://apps.kew.org/herbcat/gotoHomePage.do
Integrated Digitized Biocollections. (2021). Welcome to the iDigBio portal. https://www.idigbio.org/portal
JACQ. (2021a). JACQ collections. https://www.jacq.org/#collections
JACQ. (2021b). JACQ home. https://www.jacq.org/#home
JSTOR. (2021). Mission and history. https://about.jstor.org/mission-history
Kamus Besar Bahasa Indonesia Daring. (2021a). Herbarium. https://kbbi.kemdikbud.go.id/entri/herbarium
Kamus Besar Bahasa Indonesia Daring. (2021b). Http. https://kbbi.kemdikbud.go.id/entri/http
Khoirul, A. (2017). Format mana yang lebih baik? jpeg atau png, ini dia alasannya. https://www.grid.id/read/04160952/format-mana-yang-lebih-baik-jpeg-atau-png-ini-dia-alasannya?page=all
Kommineni, V. K., Tautenhahn, S., Baddam, P., Gaikwad, J., Wieczorek, B., Triki, A., & Kattge, J. (2021). Comprehensive leaf size traits dataset for seven plant species from digitised herbarium specimen images covering more than two centuries. Biodiversity Data Journal, 9(e69806), 1–41. https://doi.org/10.3897/BDJ.9.e69806
Kovtonyuk, N., Han, I., & Gatilova, E. (2021). Ferns at the digital herbarium of the Central Siberian Botanical Garden SB RAS. Biodiversity Data Journal, 9(e72950), 1–14. https://doi.org/10.3897/BDJ.9.e72950
Lavoie, C. (2013). Biological collections in an ever-changing world: Herbaria as tools for biogeographical and environmental studies. Perspectives in Plant Ecology, Evolution and Systematics, 15(1), 68–76. https://doi.org/10.1016/j.ppees.2012.10.002
Leki, P. T., Makaborang, Y., & Ndjoeroemana, Y. (2022). Keanekaragaman tumbuhan paku (Pteridophyta) di daerah aliran sungai Pepuwatu Desa Prai Paha Kabupaten Sumba Timur sebagai sumber belajar biologi. Bioedukasi, 13(1), 42–58. https://doi.org/10.24127/bioedukasi.v13i1.5304
Lima, D. F., Mello, J. H. F., Lopes, I. T., Forzza, R. C., Goldenberg, R., & Freitas, L. (2021). Phenological responses to climate change based on a hundred years of herbarium collections of tropical Melastomataceae. PLoS ONE, 16(5), 1–19. https://doi.org/10.1371/journal.pone.0251360
Lohonya, K., Livermore, L., & Penn, M. G. (2020). Georeferencing the Natural History Museum’s Chinese type collection: of plateaus, pagodas and plants. Biodiversity Data Journal, 8(e50503), 1–29. https://doi.org/10.3897/BDJ.8.e50503
Mokodompit, R., Kandowangko, N. Y., & Hamidun, M. S. (2022). Keanekaragaman tumbuhan di Kampus Universitas Negeri Gorontalo Kecamatan Tilong Kabila Kabupaten Bone Bolango. Biosfer: Jurnal Biologi Dan Pendidikan Biologi, 7(1), 75–80. https://doi.org/10.23969/biosfer.v7i1.5651
Muséum National d’Histoire Naturelle. (2021a). Muséum National d’Histoire Naturelle, understanding and preserving nature. https://www.mnhn.fr/sites/mnhn.fr/files/documents/plaquette_institutionelle_mnhn_en.pdf
Muséum National d’Histoire Naturelle. (2021b). Presentation. https://www.mnhn.fr/en/about-museum/presentation
Muséum National d’Histoire Naturelle. (2021c). Vascular Plants (P). https://science.mnhn.fr/institution/mnhn/collection/p/item/search/form
Nashihuddin, W., & Tupan. (2019). Analisis pemanfaatan koleksi jurnal internasional tercetak: tinjauan kebijakan pengembangan koleksi Jurnal online di PDII-LIPI. Khizanah Al-Hikmah: Jurnal Ilmu Perpustakaan, Informasi, Dan Kearsipan, 7(1), 38. https://doi.org/10.24252/kah.v7i1a4
New York Botanical Garden. (2021a). C. V. Starr Virtual Herbarium. http://sweetgum.nybg.org/science/vh
New York Botanical Garden. (2021b). Collections. http://sweetgum.nybg.org/science/collections
New York Botanical Garden. (2021c). Global resource for plants & fungi. http://sweetgum.nybg.org/science
New York Botanical Garden. (2021d). Index herbariorum. http://sweetgum.nybg.org/science/ih
New York Botanical Garden. (2021e). Type specimen index. http://sweetgum.nybg.org/science/vh/type-specimen-index
Plants of the World Online. (2021). Welcome to Plants of the World Online. http://powo.science.kew.org
Powell, C., Krakowiak, A., Fuller, R., Rylander, E., Gillespie, E., Krosnick, S., Ruhfel, B., Morris, A. B., & Shaw, J. (2021). Estimating herbarium specimen digitization rates: Accounting for human experience. Applications in Plant Sciences, 9(4), 1–8. https://doi.org/10.1002/aps3.11415
Prunera-Olive, J., Vorontsova, M., Williams, E. v, Mollel, N. P., & Hemp, A. (2021). Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity. Phytotaxa, 501(2), 201–244. https://doi.org/10.11646/phytotaxa.501.2.1
Purba, J. F. P. (2020, October 3). Strategi penelusuran informasi di internet. https://dkpus.babelprov.go.id/content/strategi-penelusuran-informasi-di-internet
Purwono. (2008, April 30). Strategi penelusuran informasi melalui internet. http://eprints.rclis.org/12193/1/Strategi_Penelusuran_melalui_Internet.pdf
Qatrunnada, Q., & Susandarini, R. (2022). Keanekaragaman dan hubungan kekerabatan fenetik spesies anggota famili Asteraceae di jalur pendakian Gunung Lawu berdasarkan karakter morfologis. Bioma: Berkala Ilmiah Biologi, 24(1), 43–53. https://doi.org/10.14710/bioma.24.1.43-53
Reflora. (2021). Home: virtual herbarium. http://floradobrasil.jbrj.gov.br/reflora/herbarioVirtual/ConsultaPublicoHVUC/ResultadoDaConsultaNovaConsulta.do?lingua=en
Richter, T., & Clark, R. (2018). Why JPEG is not JPEG — Testing a 25 years old standard. 2018 Picture Coding Symposium (PCS), 1–5. https://doi.org/10.1109/PCS.2018.8456260
Rocchetti, A. G., Armstrong, C. G., Abeli, T., Orsenigo, S., Jasper, C., Joly, S., Bruneau, A., Zytaruk, M., & Vamosi, J. C. (2021). Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species. New Phytologist, 230(2), 433–450. https://doi.org/10.1111/nph.17133
Roselince, E. V., Makaborang, Y., & Ina, A. T. (2021). Keanekaragaman tumbuhan berbunga kelas Magnoliopsida di pesisir Pantai Kapihak di Pulau Sumba. Jurnal Penelitian Kehutanan Bonita, 3(2), 47–54. https://doi.org/10.55285/bonita.v3i2.1038
Saputri, E. (2021). Strategi penelusuran informasi melalui search engine (Google). Jurnal Adabiya, 23(2), 232–247. https://doi.org/10.22373/adabiya.v23i2.10137
Seregin, A. P. (2017). Digital herbarium of Moscow State University: The largest Russian biodiversity database. Biology Bulletin, 44(6), 584–590. https://doi.org/10.1134/S1062359017060103
Suripto, & Maulidan, Y. (2021). Teknik identifikasi dan koleksi tumbuhan anggrek di Kawasan Resort Kembang Kuning Taman Nasional Gunung Rinjani (TNGR). Jurnal Pengabdian Magister Pendidikan IPA, 4(3), 474–480. https://doi.org/https://doi.org/10.29303/jpmpi.v3i2.1238
Sweeney, P. W., Starly, B., Morris, P. J., Xu, Y., Jones, A., Radhakrishnan, S., Grassa, C. J., & Davis, C. C. (2018). Large-scale digitization of herbarium specimens: Development and usage of an automated, high-throughput conveyor system. Taxon, 67(1), 165–178. https://doi.org/10.12705/671.9
Tariang, D. B., Roy, A., Chakraborty, R. S., & Naskar, R. (2017). Automated JPEG forgery detection with correlation based localization. 2017 IEEE International Conference on Multimedia & Expo Workshops (ICMEW), 226–231. https://doi.org/10.1109/ICMEW.2017.8026326
Tropicos. (2021). Tropicos: home. https://www.tropicos.org/home
Tulig, M., Tarnowsky, N., Bevans, M., Kirchgessner, A., & Thiers, B. (2012). Increasing the efficiency of digitization workflows for herbarium specimens. ZooKeys, 209, 103–113. https://doi.org/10.3897/zookeys.209.3125
Turland, N. J., Wiersema, J. H., Barrie, F. R., Greuter, W., Hawksworth, D. L., Herendeen, P. S., Knapp, S., Kusber, W. H., Li, D. Z., Marhold, K., May, T. W., McNeill, J., Monro, A. M., Prado, J., Price, M. J., & Smith, G. F. (2018). International code of nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum vegetabile 159. Koeltz Botanical Books.
Ulum, F. B., Wiyono, H. T., & Setyati, D. (2022). Trichosanthes tricuspidata Lour. dari Kabupaten Jember, Jawa Timur. Jurnal Hasil Penelitian Universitas Jember, 1(1), 92–96. https://journal.unej.ac.id/JHP/article/view/17
Véron, S., Rodrigues-Vaz, C., Lebreton, E., Ah-Peng, C., Boullet, V., Chevillotte, H., Gradstein, S. R., Jérémie, J., Lavocat Bernard, E., Lebouvier, M., Meyer, J.-Y., Munzinger, J., Poncy, O., Thouvenot, L., Viscardi, G., Léotard, G., Gargominy, O., Leblond, S., Pignal, M., … Muller, S. (2021). An assessment of the endemic spermatophytes, pteridophytes and bryophytes of the French Overseas Territories: towards a better conservation outlook. Biodiversity and Conservation, 30, 2097–2124. https://doi.org/10.1007/s10531-021-02186-8
Vorontsova, M. S., Clark, L. G., Dransfield, J., Govaerts, R. H. A., & Baker, W. J. (2016). World checklist of bamboos and rattans. INBAR Technical Report, 37, 1–454.
Widjaja, E. A. (2019). The spectacular Indonesian bamboos. Polagrade.
Xu, G., Shen, S., Zhang, Y., Clements, D. R., Yang, S., Li, J., Dong, L., Zhang, F., Jin, G., & Gao, Y. (2019). Designing cropping systems to improve the management of the invasive weed Phalaris minor Retz. Agronomy, 9(809), 1–12. https://doi.org/10.3390/agronomy9120809
Younis, S., Schmidt, M., Weiland, C., Dressler, S., Seeger, B., & Hickler, T. (2020). Detection and annotation of plant organs from digitised herbarium scans using deep learning. Biodiversity Data Journal, 8(e57090), 1–18. https://doi.org/10.3897/BDJ.8.e57090
Younis, S., Weiland, C., Hoehndorf, R., Dressler, S., Hickler, T., Seeger, B., & Schmidt, M. (2018). Taxon and trait recognition from digitized herbarium specimens using deep convolutional neural networks. Botany Letters, 165(3–4), 377–383. https://doi.org/10.1080/23818107.2018.1446357
Yu, T. Y., Turner, I. M., & Cheek, M. (2021). Revision of Chassalia (Rubiaceae-Rubioideae-Palicoureeae) in Borneo, with 14 new species. European Journal of Taxonomy, 738(1), 1–60. https://doi.org/10.5852/ejt.2021.738.1261
Zabar, A. A., & Novianto, F. (2015). Keamanan http dan https berbasis web menggunakan sistem operasi Kali Linux. Komputa: Jurnal Ilmiah Komputer Dan Informatika, 4(2), 69–74. https://doi.org/10.34010/komputa.v4i2.2427
DOI: https://doi.org/10.14203/j.baca.v43i1.848
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Damayanto, I Putu Gede P.; Irsyam, Arifin Surya Dwipa, 2022, "PENELUSURAN SPESIMEN HERBARIUM SECARA DARING", https://hdl.handle.net/20.500.12690/RIN/AF80P2, RIN Dataverse, DRAFT VERSION
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